Index

C

coefficients() (in module demask.fit)

compute_scores() (in module demask.predict)

D

demask.fit module demask.homologs module demask.matrix module

demask.predict module demask.profiles module demask.utils module demask_score() (in module demask.predict)

E

entropies() (in module demask.utils)

extract_DMS_WT() (in module demask.utils)

F

find_homologs() (in module demask.homologs), [1]

fit_model() (in module demask.fit), [1]

G

get_aligned_AAs() (in module demask.homologs) get_aligned_profile() (in module demask.profiles)

get_filenames() (in module demask.utils) get_subs_matrix() (in module demask.matrix) get_weights() (in module demask.profiles)

I

index() (in module demask.utils)

L

load_dataset() (in module demask.utils)

M

module demask.fit demask.homologs demask.matrix demask.predict demask.profiles demask.utils

P

passes_filters() (in module demask.homologs)

prepare_matrix() (in module demask.matrix), [1] process_query() (in module demask.homologs)

R

read_coefficients() (in module demask.predict) read_fasta() (in module demask.utils)

read_matrix() (in module demask.utils) run_blastp() (in module demask.homologs) run_demask() (in module demask.predict), [1]

S

seq_matrix() (in module demask.utils)

W

write_fasta() (in module demask.utils)

write_matrix() (in module demask.matrix)